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A GEP-ISFG collaborative study on the optimization of an X-STR decaplex: data on 15 Iberian and Latin American populations

2009Journal article Restricted access
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dc.contributor.authorGusmão, Leonor
dc.contributor.authorSánchez-Diz, Paula
dc.contributor.authorAlves, Cíntia
dc.contributor.authorGomes, Iva
dc.contributor.authorZarrabeitia, María Teresa
dc.contributor.authorAbovich, Mariel
dc.contributor.authorAtmetlla, Ivannia
dc.contributor.authorBobillo, Cecilia
dc.contributor.authorBravo, Luisa
dc.contributor.authorBuiles, Juan
dc.contributor.authorCainé, Laura
dc.contributor.authorCalvo, Raquel
dc.contributor.authorCarvalho, Elizeu
dc.contributor.authorCarvalho, Mónica
dc.contributor.authorCicarelli, Regina
dc.contributor.authorCatelli, Laura
dc.contributor.authorCorach, Daniel
dc.contributor.authorEspinoza, Marta
dc.contributor.authorGarcía, Óscar
dc.contributor.authorMalaghini, Marcelo
dc.contributor.authorMartins, Joyce
dc.contributor.authorPinheiro, Fátima
dc.contributor.authorJoão Porto, Maria
dc.contributor.authorRaimondi, Eduardo
dc.contributor.authorRiancho, Jose Antonio
dc.contributor.authorRodríguez, Amelia
dc.contributor.authorRodríguez, Anayanci
dc.contributor.authorRodríguez Cardozo, Belén
dc.contributor.authorSchneider, Vicente
dc.contributor.authorSilva, Sandra
dc.contributor.authorTavares, Celso
dc.contributor.authorToscanini, Ulises
dc.contributor.authorVullo, Carlos
dc.contributor.authorWhittle, Martin
dc.contributor.authorYurrebaso, Iñaki
dc.contributor.authorCarracedo, Ángel
dc.contributor.authorAmorim, António
dc.date.accessioned2023-04-27T15:05:32Z
dc.date.available2023-04-27T15:05:32Z
dc.date.issued2009
dc.description.abstractIn a collaborative work carried out by the Spanish and Portuguese ISFG Working Group (GEP-ISFG), a polymerase chain reaction multiplex was optimized in order to type ten X-chromosome short tandem repeats (STRs) in a single reaction, including: DXS8378, DXS9902, DXS7132, DXS9898, DXS6809, DXS6789, DXS7133, GATA172D05, GATA31E08, and DXS7423. Using this X-decaplex, each 17 of the participating laboratories typed a population sample of approximately 200 unrelated individuals (100 males and 100 females). In this work, we report the allele frequencies for the ten X-STRs in 15 samples from Argentina (Buenos Aires, Córdoba, Río Negro, Entre Ríos, and Misiones), Brazil (São Paulo, Rio de Janeiro, Paraná, and Mato Grosso do Sul), Colombia (Antioquia), Costa Rica, Portugal (Northern and Central regions), and Spain (Galicia and Cantabria). Gene diversities were calculated for the ten markers in each population and all values were above 56%. The average diversity per locus varied between 66%, for DXS7133, and 82%, for DXS6809. For this set of STRs, a high discrimination power was obtained in all populations, both in males (> or =1 in 5 x 10(5)) and females (> or =1 in 3 x 10(9)), as well as high mean exclusion chance in father/daughter duos (> or =99.953%) and in father/mother/daughter trios (> or =99.999%). Genetic distance analysis showed no significant differences between northern and central Portugal or between the two Spanish samples from Galicia and Cantabria. Inside Brazil, significant differences were found between Rio de Janeiro and the other three populations, as well as between São Paulo and Paraná. For the five Argentinean samples, significant distances were only observed when comparing Misiones with Entre Ríos and with Río Negro, the only two samples that do not differ significantly from Costa Rica. Antioquia differed from all other samples, except the one from Río Negro.pt_PT
dc.description.versioninfo:eu-repo/semantics/publishedVersionpt_PT
dc.identifier.citationGusmão, L., Sánchez-Diz, P., Alves, C., Gomes, I., Zarrabeitia, M. T., Abovich, M., Atmetlla, I., Bobillo, C., Bravo, L., Builes, J., Cainé, L., Calvo, R., Carvalho, E., Carvalho, M., Cicarelli, R., Catelli, L., Corach, D., Espinoza, M., García, O., Malaghini, M., … Amorim, A. (2009). A GEP-ISFG collaborative study on the optimization of an X-STR decaplex: data on 15 Iberian and Latin American populations. International journal of legal medicine, 123(3), 227–234. https://doi.org/10.1007/s00414-008-0309-4pt_PT
dc.identifier.doi10.1007/s00414-008-0309-4pt_PT
dc.identifier.issn1437-1596
dc.identifier.urihttp://hdl.handle.net/10400.26/44650
dc.language.isoengpt_PT
dc.peerreviewedyespt_PT
dc.publisherSpringerpt_PT
dc.relationFCT-POCI 2010pt_PT
dc.subjectGenetics, Populationpt_PT
dc.subjectAllelespt_PT
dc.subjectGenetic Variationpt_PT
dc.subjectEthnicitypt_PT
dc.titleA GEP-ISFG collaborative study on the optimization of an X-STR decaplex: data on 15 Iberian and Latin American populationspt_PT
dc.typejournal article
dspace.entity.typePublication
oaire.citation.endPage234pt_PT
oaire.citation.startPage227pt_PT
oaire.citation.titleInternational Journal of Legal Medicinept_PT
oaire.citation.volume123(3)pt_PT
person.familyNameCainé
person.familyNameCarvalho
person.givenNameLaura
person.givenNameMónica
person.identifierAAR-9087-2020
person.identifier.ciencia-id021A-33DD-869D
person.identifier.orcid0000-0002-6542-4256
person.identifier.orcid0000-0002-9195-5640
person.identifier.scopus-author-id2311978
person.identifier.scopus-author-id7201414007
rcaap.rightsclosedAccesspt_PT
rcaap.typearticlept_PT
relation.isAuthorOfPublication1a1e1ffc-1439-48f2-a4c3-359c66db3ad1
relation.isAuthorOfPublication25139469-58ba-46e0-97dd-ca821eb3297a
relation.isAuthorOfPublication.latestForDiscovery1a1e1ffc-1439-48f2-a4c3-359c66db3ad1

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